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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS39503.1MerR family transcriptional regulator. (185 aa)    
Predicted Functional Partners:
AMS39504.1
Hypothetical protein; Pfam:pfam13411 MerR HTH family regulatory protein.
     0.907
AMS40510.1
Integrase family protein.
 
   
 0.697
AMS43907.1
Amino acid ABC transporter substrate-binding protein; Pfam:pfam01094 Receptor family ligand binding region.
  
     0.611
AMS41484.1
Hypothetical protein; Pfam:pfam08241 Methyltransferase domain.
 
     0.603
AMS39440.1
Damage-inducible protein DinB; Pfam:pfam05163 DinB family.
  
     0.557
AMS39312.1
Hypothetical protein.
  
     0.543
AMS41902.1
LysR family transcriptional regulator; Pfam:pfam03466 LysR substrate binding domain; Belongs to the LysR transcriptional regulatory family.
  
     0.528
AMS39468.1
Transcriptional activator FtrA; Pfam:pfam12833 Helix-turn-helix domain.
  
 
 0.490
AMS39505.1
Cystathionine beta-synthase; Pfam:pfam00291 Pyridoxal-phosphate dependent enzyme.
       0.463
AMS39506.1
Cystathionine beta-lyase; Pfam:pfam01053 Cys/Met metabolizm PLP-dependent enzyme.
       0.461
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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