STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS39574.1Hypothetical protein; Pfam:pfam02423 Ornithine cyclodeaminase/mu-crystallin family. (321 aa)    
Predicted Functional Partners:
AMS39573.1
Pfam:pfam01266 FAD dependent oxidoreductase.
  
  
 0.628
AMS39572.1
Pfam:pfam00384 Molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
     
 0.615
AMS39575.1
Hypothetical protein; Pfam:pfam07729 FCD domain.
 
     0.581
AMS39571.1
Hypothetical protein; Pfam:pfam13458 Periplasmic binding protein.
       0.540
AMS40262.1
4-hydroxyproline epimerase; Pfam:pfam05544 Proline racemase; Belongs to the proline racemase family.
 
   
 0.491
AMS39834.1
Arginase; Pfam:pfam00491 Arginase family; Belongs to the arginase family.
 
   
 0.468
AMS42002.1
Bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
  
  
 0.422
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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