STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS39595.12-amino-3-ketobutyrate coenzyme A ligase; Pfam:pfam00155 Aminotransferase class I and II. (363 aa)    
Predicted Functional Partners:
AMS42910.1
Pfam:pfam00202 Aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
 
 0.958
AMS42908.1
8-amino-7-oxononanoate synthase; Pfam:pfam00155 Aminotransferase class I and II.
  
  
 
0.928
bioD
Hypothetical protein; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring.
 
  
 0.776
AMS39596.1
Hypothetical protein; Pfam:pfam00144 Beta-lactamase.
       0.774
AMS39594.1
Peptide ABC transporter; Pfam:pfam04951 D-aminopeptidase.
 
     0.763
bioB
Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
 
  
 0.725
AMS39597.1
Peptide ABC transporter permease; Pfam:pfam00528 Binding-protein-dependent transport system inner membrane component.
       0.655
AMS39598.1
Dipeptide ABC transport system permease protein DppB; Pfam:pfam00528 Binding-protein-dependent transport system inner membrane component.
       0.655
tdh
L-threonine 3-dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-threonine to 2- amino-3-ketobutyrate; Belongs to the zinc-containing alcohol dehydrogenase family.
 
  
 0.565
AMS39548.1
L-threonine 3-dehydrogenase; Pfam:pfam08240 Alcohol dehydrogenase GroES-like domain.
 
  
 0.559
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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