STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS39596.1Hypothetical protein; Pfam:pfam00144 Beta-lactamase. (558 aa)    
Predicted Functional Partners:
AMS39595.1
2-amino-3-ketobutyrate coenzyme A ligase; Pfam:pfam00155 Aminotransferase class I and II.
       0.774
AMS39594.1
Peptide ABC transporter; Pfam:pfam04951 D-aminopeptidase.
 
     0.773
AMS39598.1
Dipeptide ABC transport system permease protein DppB; Pfam:pfam00528 Binding-protein-dependent transport system inner membrane component.
 
     0.699
AMS39597.1
Peptide ABC transporter permease; Pfam:pfam00528 Binding-protein-dependent transport system inner membrane component.
       0.656
AMS39599.1
ABC transporter substrate-binding protein; Pfam:pfam00496 Bacterial extracellular solute-binding proteins, family 5 Middle.
 
     0.620
AMS41396.1
Hypothetical protein; Pfam:pfam00144 Beta-lactamase.
  
     0.525
AMS39607.1
Hypothetical protein; Pfam:pfam00144 Beta-lactamase.
    
0.450
AMS41057.1
Hypothetical protein; Pfam:pfam00144 Beta-lactamase.
  
     0.409
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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