Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMS39598.1Dipeptide ABC transport system permease protein DppB; Pfam:pfam00528 Binding-protein-dependent transport system inner membrane component. (345 aa)    
Predicted Functional Partners:
AMS39597.1
Peptide ABC transporter permease; Pfam:pfam00528 Binding-protein-dependent transport system inner membrane component.
 
  0.996
AMS39594.1
Peptide ABC transporter; Pfam:pfam04951 D-aminopeptidase.
  
 
  0.966
AMS39601.1
Putative peptide ABC transporter ATP-binding protein y4tR; Pfam:pfam00005 ABC transporter; Belongs to the ABC transporter superfamily.
 
  0.965
AMS39599.1
ABC transporter substrate-binding protein; Pfam:pfam00496 Bacterial extracellular solute-binding proteins, family 5 Middle.
 
   0.886
AMS39552.1
Pfam:pfam00528 Binding-protein-dependent transport system inner membrane component.
 
   0.859
AMS40097.1
Pfam:pfam00528 Binding-protein-dependent transport system inner membrane component.
 
   0.859
AMS43200.1
ABC transporter permease; Pfam:pfam00528 Binding-protein-dependent transport system inner membrane component.
 
   0.859
AMS43838.1
Pfam:pfam00528 Binding-protein-dependent transport system inner membrane component.
 
   0.859
AMS41617.1
Pfam:pfam00528 Binding-protein-dependent transport system inner membrane component.
 
   0.858
AMS39282.1
Pfam:pfam00528 Binding-protein-dependent transport system inner membrane component.
 
   0.857
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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