Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMS39605.1Pfam:pfam01418 Helix-turn-helix domain, rpiR family. (288 aa)    
Predicted Functional Partners:
AMS39606.1
Hypothetical protein; Pfam:pfam00496 Bacterial extracellular solute-binding proteins, family 5 Middle.
 
     0.695
AMS40594.1
Hypothetical protein; Pfam:pfam01418 Helix-turn-helix domain, rpiR family.
  
     0.584
AMS39607.1
Hypothetical protein; Pfam:pfam00144 Beta-lactamase.
  
    0.544
AMS39501.1
Hypothetical protein; Pfam:pfam01380 SIS domain.
  
     0.454
AMS39161.1
Asparaginase; Pfam:pfam01112 Asparaginase.
  
    0.440
AMS39604.1
Hypothetical protein.
       0.429
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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