STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS39612.13-oxoacyl-ACP reductase; Pfam:pfam13561 Enoyl-(Acyl carrier protein) reductase. (233 aa)    
Predicted Functional Partners:
cmk
Pfam:pfam02224 Cytidylate kinase.
  
    0.751
aroA
3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.
       0.690
AMS42565.1
Short-chain dehydrogenase/reductase; Pfam:pfam00106 short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.638
AMS39616.1
Hypothetical protein; Pfam:pfam00106 short chain dehydrogenase.
 
  
 0.584
AMS39614.1
30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
  
    0.486
AMS40548.1
Hypothetical protein; Pfam:pfam00884 Sulfatase.
  
 
 0.465
AMS39610.1
Pfam:pfam09538 Protein of unknown function (FYDLN_acid).
       0.436
AMS40963.1
PTS galactitol transporter subunit IIC; Pfam:pfam03611 PTS system sugar-specific permease component.
  
    0.428
AMS43446.1
ACP S-malonyltransferase; Pfam:pfam00698 Acyl transferase domain.
  
 
 0.426
AMS42369.1
Hypothetical protein; Pfam:pfam00106 short chain dehydrogenase.
 
 
 0.415
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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