STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS39654.1Diguanylate cyclase; Pfam:pfam00563 EAL domain. (447 aa)    
Predicted Functional Partners:
AMS43733.1
Diguanylate cyclase; Pfam:pfam00563 EAL domain.
 
 
0.641
AMS44355.1
Diguanylate cyclase; Pfam:pfam00990 GGDEF domain.
 
 
0.601
AMS39479.1
Hypothetical protein; Pfam:pfam00563 EAL domain.
 
 
0.586
AMS44205.1
Diguanylate cyclase; Pfam:pfam00990 GGDEF domain.
 
 
0.531
AMS40522.1
PAS/PAC sensor hybrid histidine kinase; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
 0.519
AMS44156.1
Hypothetical protein; Pfam:pfam00563 EAL domain.
 
 
0.512
AMS38957.1
Diguanylate phosphodiesterase; Pfam:pfam00563 EAL domain.
 
 
0.495
AMS40285.1
Chemotaxis protein CheY; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
 0.484
AMS42333.1
Diguanylate cyclase (GGDEF) domain-containing protein; Pfam:pfam00990 GGDEF domain.
 
 
0.484
AMS42072.1
Diguanylate cyclase; Pfam:pfam00990 GGDEF domain.
 
0.481
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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