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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS39712.1Dioxygenase; Pfam:pfam13532 2OG-Fe(II) oxygenase superfamily. (197 aa)    
Predicted Functional Partners:
AMS44354.1
2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.
   
    0.674
AMS39711.1
Peptidoglycan-binding protein LysM; Pfam:pfam01476 LysM domain.
 
     0.655
AMS40670.1
Hypothetical protein; Pfam:pfam02805 Metal binding domain of Ada.
  
  
 0.582
AMS39710.1
peptidyl-tRNA hydrolase; Pfam:pfam00472 RF-1 domain.
  
    0.457
AMS40700.1
DNA-3-methyladenine glycosidase; Pfam:pfam00730 HhH-GPD superfamily base excision DNA repair protein.
     
 0.430
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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