STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS39727.1DNA-binding protein; Pfam:pfam12844 Helix-turn-helix domain. (124 aa)    
Predicted Functional Partners:
AMS39730.1
Calcium-binding protein; Pfam:pfam04280 Tim44-like domain.
 
     0.877
AMS39729.1
Transglycosylase; Pfam:pfam03562 MltA specific insert domain.
       0.845
AMS39728.1
Hypothetical protein; Pfam:pfam01713 Smr domain.
       0.838
AMS39731.1
Exclusion suppressor FxsA; Pfam:pfam04186 FxsA cytoplasmic membrane protein.
       0.648
AMS41092.1
Hypothetical protein.
  
     0.593
AMS44392.1
Pfam:pfam12802 MarR family.
  
   0.576
AMS42960.1
Hypothetical protein; Pfam:pfam03981 Ubiquinol-cytochrome C chaperone.
  
     0.506
AMS42248.1
Pfam:pfam10691 Protein of unknown function (DUF2497).
  
     0.493
secB
Preprotein translocase subunit SecB; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA.
       0.468
AMS41707.1
ArsR family transcriptional regulator; Pfam:pfam13847 Methyltransferase domain.
  
  
 0.460
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.