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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS39728.1Hypothetical protein; Pfam:pfam01713 Smr domain. (182 aa)    
Predicted Functional Partners:
AMS39729.1
Transglycosylase; Pfam:pfam03562 MltA specific insert domain.
 
     0.870
AMS39727.1
DNA-binding protein; Pfam:pfam12844 Helix-turn-helix domain.
       0.804
AMS39730.1
Calcium-binding protein; Pfam:pfam04280 Tim44-like domain.
 
     0.783
rpmI
Pfam:pfam01632 Ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.
 
 
 
 0.574
rpmF
Pfam:pfam01783 Ribosomal L32p protein family; Belongs to the bacterial ribosomal protein bL32 family.
 
 
   0.570
AMS39614.1
30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
  
 
   0.566
rpsU
Pfam:pfam01165 Ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
  
 
   0.564
AMS39731.1
Exclusion suppressor FxsA; Pfam:pfam04186 FxsA cytoplasmic membrane protein.
       0.557
rpsJ
30S ribosomal subunit protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
   
 
 0.549
rpmB
Pfam:pfam00830 Ribosomal L28 family; Belongs to the bacterial ribosomal protein bL28 family.
    
 
 0.535
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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