STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS39729.1Transglycosylase; Pfam:pfam03562 MltA specific insert domain. (368 aa)    
Predicted Functional Partners:
AMS39728.1
Hypothetical protein; Pfam:pfam01713 Smr domain.
 
     0.894
AMS39727.1
DNA-binding protein; Pfam:pfam12844 Helix-turn-helix domain.
       0.845
AMS39730.1
Calcium-binding protein; Pfam:pfam04280 Tim44-like domain.
       0.801
AMS39731.1
Exclusion suppressor FxsA; Pfam:pfam04186 FxsA cytoplasmic membrane protein.
       0.648
secB
Preprotein translocase subunit SecB; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA.
       0.477
AMS42232.1
Peptidase; Pfam:pfam01435 Peptidase family M48.
  
    0.432
AMS39703.1
Pfam:pfam03610 PTS system fructose IIA component.
  
     0.422
trmJ
RNA methyltransferase; Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA.
  
   
 0.418
AMS43125.1
Riboflavin kinase; Pfam:pfam06574 FAD synthetase; Belongs to the ribF family.
      
 0.402
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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