STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS39843.1Ureidoglycolate lyase; Pfam:pfam01557 Fumarylacetoacetate (FAA) hydrolase family. (284 aa)    
Predicted Functional Partners:
AMS39848.1
Oxidoreductase; Pfam:pfam13561 Enoyl-(Acyl carrier protein) reductase.
 
 0.963
AMS40036.1
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase; Pfam:pfam01557 Fumarylacetoacetate (FAA) hydrolase family.
  
  
 
0.916
AMS39842.1
Fuconate dehydratase; Pfam:pfam13378 Enolase C-terminal domain-like; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
  
 0.755
AMS39847.1
Pfam:pfam04909 Amidohydrolase.
 
     0.738
AMS39841.1
Hypothetical protein; Pfam:pfam13561 Enoyl-(Acyl carrier protein) reductase.
 
 
 0.723
AMS39844.1
LacI family transcriptional regulator; Pfam:pfam13407 Periplasmic binding protein domain.
       0.586
AMS39849.1
Hypothetical protein; Pfam:pfam09339 IclR helix-turn-helix domain.
 
   
 0.559
AMS40822.1
Allantoin catabolism protein; Pfam:pfam07883 Cupin domain.
     
  0.499
rbsA
Hypothetical protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
  
    0.422
AMS39845.1
Ribose ABC transporter permease; Pfam:pfam02653 Branched-chain amino acid transport system / permease component; Belongs to the binding-protein-dependent transport system permease family.
       0.412
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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