close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS39850.1Ribose ABC transporter; Pfam:pfam05025 RbsD / FucU transport protein family; Belongs to the RbsD / FucU family. (146 aa)    
Predicted Functional Partners:
AMS39845.1
Ribose ABC transporter permease; Pfam:pfam02653 Branched-chain amino acid transport system / permease component; Belongs to the binding-protein-dependent transport system permease family.
    
  0.903
AMS39851.1
Pfam:pfam00005 ABC transporter.
       0.490
AMS39852.1
Peptide ABC transporter ATP-binding protein; Pfam:pfam00005 ABC transporter.
       0.490
AMS39853.1
Pfam:pfam00528 Binding-protein-dependent transport system inner membrane component.
       0.490
AMS39854.1
Peptide ABC transporter permease; Pfam:pfam00528 Binding-protein-dependent transport system inner membrane component.
       0.490
AMS39234.1
L-glyceraldehyde 3-phosphate reductase; Pfam:pfam00248 Aldo/keto reductase family.
 
     0.466
AMS39847.1
Pfam:pfam04909 Amidohydrolase.
 
     0.426
AMS39844.1
LacI family transcriptional regulator; Pfam:pfam13407 Periplasmic binding protein domain.
 
   
 0.417
AMS42706.1
Arylesterase; Pfam:pfam13472 GDSL-like Lipase/Acylhydrolase family.
  
     0.416
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.