Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMS39850.1Ribose ABC transporter; Pfam:pfam05025 RbsD / FucU transport protein family; Belongs to the RbsD / FucU family. (146 aa)    
Predicted Functional Partners:
AMS39845.1
Ribose ABC transporter permease; Pfam:pfam02653 Branched-chain amino acid transport system / permease component; Belongs to the binding-protein-dependent transport system permease family.
    
  0.902
AMS39851.1
Pfam:pfam00005 ABC transporter.
       0.490
AMS39852.1
Peptide ABC transporter ATP-binding protein; Pfam:pfam00005 ABC transporter.
       0.490
AMS39853.1
Pfam:pfam00528 Binding-protein-dependent transport system inner membrane component.
       0.490
AMS39854.1
Peptide ABC transporter permease; Pfam:pfam00528 Binding-protein-dependent transport system inner membrane component.
       0.490
AMS39234.1
L-glyceraldehyde 3-phosphate reductase; Pfam:pfam00248 Aldo/keto reductase family.
 
     0.467
AMS39847.1
Pfam:pfam04909 Amidohydrolase.
 
     0.449
AMS42706.1
Arylesterase; Pfam:pfam13472 GDSL-like Lipase/Acylhydrolase family.
  
     0.416
AMS39844.1
LacI family transcriptional regulator; Pfam:pfam13407 Periplasmic binding protein domain.
 
     0.402
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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