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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS39863.1Signal peptide protein. (167 aa)    
Predicted Functional Partners:
AMS39975.1
Pfam:pfam07219 HemY protein N-terminus.
  
     0.737
AMS39697.1
LuxR family transcriptional regulator; Pfam:pfam12705 PD-(D/E)XK nuclease superfamily.
  
     0.685
AMS39730.1
Calcium-binding protein; Pfam:pfam04280 Tim44-like domain.
  
     0.655
AMS39700.1
Alkaline phosphatase; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
     0.599
AMS40329.1
TolA, TolA protein.
  
     0.582
AMS39749.1
Hypothetical protein; Pfam:pfam06144 DNA polymerase III, delta subunit.
  
     0.578
AMS42978.1
MarR family transcriptional regulator; Pfam:pfam13463 Winged helix DNA-binding domain.
 
     0.572
AMS40243.1
Membrane protein; Pfam:pfam01551 Peptidase family M23.
 
     0.565
AMS39705.1
Histidine kinase; Pfam:pfam13756 Stimulus-sensing domain.
  
     0.562
AMS39862.1
Hypothetical protein; Pfam:pfam00583 Acetyltransferase (GNAT) family.
       0.558
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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