STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AMS39870.1Glycosyl transferase family 1; Pfam:pfam02687 FtsX-like permease family. (847 aa)    
Predicted Functional Partners:
AMS39868.1
G-D-S-L family lipolytic protein; Pfam:pfam13472 GDSL-like Lipase/Acylhydrolase family.
 
 
   0.944
AMS39869.1
Pfam:pfam00005 ABC transporter.
 
 
 
 0.942
AMS39871.1
Membrane protein; Pfam:pfam01027 Inhibitor of apoptosis-promoting Bax1; Belongs to the BI1 family.
       0.600
AMS39872.1
Hypothetical protein; Pfam:pfam13420 Acetyltransferase (GNAT) domain.
       0.472
AMS40305.1
Metalloprotease; Pfam:pfam01435 Peptidase family M48.
  
     0.453
AMS39867.1
2'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family.
       0.400
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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