STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS39894.1Septation protein A; Involved in cell division; probably involved in intracellular septation; Belongs to the YciB family. (215 aa)    
Predicted Functional Partners:
ftsY
Signal recognition particle receptor FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components.
       0.804
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
       0.777
AMS39892.1
2-methylthioadenine synthase; Pfam:pfam00919 Uncharacterized protein family UPF0004.
       0.777
AMS39895.1
Flavin-nucleotide-binding protein; Pfam:pfam01243 Pyridoxamine 5'-phosphate oxidase.
       0.770
AMS39896.1
FMN reductase; Pfam:pfam03358 NADPH-dependent FMN reductase.
       0.628
AMS39890.1
Membrane protein; Pfam:pfam02974 Protease inhibitor Inh.
 
     0.573
AMS39889.1
Hypothetical protein; Pfam:pfam03969 AFG1-like ATPase.
 
     0.532
AMS39886.1
Pfam:pfam10984 Protein of unknown function (DUF2794).
 
     0.496
AMS41241.1
Pfam:pfam06627 Protein of unknown function (DUF1153).
  
     0.478
AMS41248.1
Histidine phosphotransferase; Pfam:pfam10090 Uncharacterized protein conserved in bacteria (DUF2328).
  
     0.478
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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