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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS39932.1Membrane protein; Pfam:pfam02308 MgtC family. (181 aa)    
Predicted Functional Partners:
AMS42146.1
Hypothetical protein; Pfam:pfam00122 E1-E2 ATPase.
 
 
 0.752
AMS43124.1
Hypothetical protein.
  
  
 0.739
AMS39883.1
Hypothetical protein.
  
  
 0.687
AMS39930.1
Hypothetical protein; Pfam:pfam12823 Domain of unknown function (DUF3817).
       0.561
AMS39931.1
Pfam:pfam03653 Uncharacterized protein family (UPF0093).
       0.561
AMS42034.1
Formamidase FmdA; Pfam:pfam03069 Acetamidase/Formamidase family.
  
    0.543
AMS43358.1
Acetamidase; Pfam:pfam03069 Acetamidase/Formamidase family.
  
    0.543
AMS42506.1
Pfam:pfam13298 DNA polymerase Ligase (LigD).
 
    0.444
AMS39927.1
Hypothetical protein; Pfam:pfam01638 HxlR-like helix-turn-helix.
       0.419
AMS39928.1
Amino acid ABC transporter; Pfam:pfam00528 Binding-protein-dependent transport system inner membrane component.
       0.419
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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