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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS39942.1Hypothetical protein; Pfam:pfam01755 Glycosyltransferase family 25 (LPS biosynthesis protein). (284 aa)    
Predicted Functional Partners:
AMS39943.1
Hypothetical protein.
       0.773
sdhB
Succinate dehydrogenase iron-sulfur subunit; Pfam:pfam13085 2Fe-2S iron-sulfur cluster binding domain; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
       0.757
AMS41439.1
Hypothetical protein; Pfam:pfam01755 Glycosyltransferase family 25 (LPS biosynthesis protein).
  
     0.672
AMS39945.1
Pfam:pfam04337 Protein of unknown function, DUF480; Belongs to the UPF0502 family.
       0.568
AMS39939.1
Pfam:pfam01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit.
       0.480
AMS39940.1
Pfam:pfam01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit.
       0.480
AMS39941.1
Succinate dehydrogenase; Pfam:pfam00890 FAD binding domain; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
       0.480
AMS39982.1
Hypothetical protein; Pfam:pfam04932 O-Antigen ligase.
 
   
 0.439
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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