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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS39946.1Nucleotidyltransferase; Pfam:pfam10127 Predicted nucleotidyltransferase. (265 aa)    
Predicted Functional Partners:
AMS39945.1
Pfam:pfam04337 Protein of unknown function, DUF480; Belongs to the UPF0502 family.
 
     0.575
AMS39943.1
Hypothetical protein.
 
     0.551
qmcA
Membrane protein; Pfam:pfam01145 SPFH domain / Band 7 family.
  
  
 0.512
AMS43526.1
BAC clone 6.
  
     0.500
AMS41794.1
Hypothetical protein.
  
     0.478
AMS39789.1
Pfam:pfam05656 Protein of unknown function (DUF805).
  
     0.422
sdhB
Succinate dehydrogenase iron-sulfur subunit; Pfam:pfam13085 2Fe-2S iron-sulfur cluster binding domain; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
       0.410
AMS41796.1
Membrane protein; Pfam:pfam10027 Predicted integral membrane protein (DUF2269).
  
     0.401
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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