Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMS40008.1Pfam:pfam03737 Demethylmenaquinone methyltransferase. (208 aa)    
Predicted Functional Partners:
AMS40009.1
Pfam:pfam00496 Bacterial extracellular solute-binding proteins, family 5 Middle.
       0.620
AMS40007.1
Transcriptional regulator, LysR family; Pfam:pfam03466 LysR substrate binding domain; Belongs to the LysR transcriptional regulatory family.
 
     0.604
AMS40011.1
ABC-type dipeptide/oligopeptide/nickel transport system, permease component; Pfam:pfam00528 Binding-protein-dependent transport system inner membrane component.
     
 0.470
AMS40010.1
ABC transporter permease; Pfam:pfam00528 Binding-protein-dependent transport system inner membrane component.
     
 0.466
AMS40012.1
Pfam:pfam00005 ABC transporter; Belongs to the ABC transporter superfamily.
       0.463
AMS40013.1
Hypothetical protein; Pfam:pfam02417 Chromate transporter.
       0.463
AMS40014.1
Pfam:pfam02417 Chromate transporter.
       0.463
mscL
Large-conductance mechanosensitive channel; Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell.
   
  
 0.454
icl
Pfam:pfam00463 Isocitrate lyase family.
 
  
 0.422
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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