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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS40015.1ATPase AAA; Pfam:pfam00158 Sigma-54 interaction domain. (634 aa)    
Predicted Functional Partners:
AMS42301.1
Dihydroxyacetone kinase; Pfam:pfam02733 Dak1 domain.
   
 
 0.719
AMS40016.1
FAD-dependent oxidoreductase; Pfam:pfam13738 Pyridine nucleotide-disulphide oxidoreductase.
 
     0.712
AMS39184.1
RNA polymerase sigma54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.693
AMS40010.1
ABC transporter permease; Pfam:pfam00528 Binding-protein-dependent transport system inner membrane component.
       0.503
AMS40011.1
ABC-type dipeptide/oligopeptide/nickel transport system, permease component; Pfam:pfam00528 Binding-protein-dependent transport system inner membrane component.
       0.503
AMS40012.1
Pfam:pfam00005 ABC transporter; Belongs to the ABC transporter superfamily.
       0.503
AMS40013.1
Hypothetical protein; Pfam:pfam02417 Chromate transporter.
       0.503
AMS40014.1
Pfam:pfam02417 Chromate transporter.
       0.503
AMS40009.1
Pfam:pfam00496 Bacterial extracellular solute-binding proteins, family 5 Middle.
 
     0.462
AMS40017.1
Pfam:pfam02954 Bacterial regulatory protein, Fis family.
 
    
0.401
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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