Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMS40113.1Pfam:pfam00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain. (338 aa)    
Predicted Functional Partners:
AMS40112.1
Pfam:pfam00528 Binding-protein-dependent transport system inner membrane component.
  
    0.657
AMS40111.1
ABC-type spermidine/putrescine transport system, ATPase component; Pfam:pfam00005 ABC transporter; Belongs to the ABC transporter superfamily.
  
    0.650
AMS40114.1
Putative 5-dehydro-4-deoxyglucarate dehydratase; Pfam:pfam00701 Dihydrodipicolinate synthetase family; Belongs to the DapA family.
     
 0.559
AMS40110.1
Hypothetical protein; Pfam:pfam13343 Bacterial extracellular solute-binding protein.
       0.521
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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