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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS40143.1Hypothetical protein. (651 aa)    
Predicted Functional Partners:
AMS40140.1
Hypothetical protein; Pfam:pfam00176 SNF2 family N-terminal domain.
 
 
 0.955
AMS40142.1
OmpA/MotB domain protein; Pfam:pfam00691 OmpA family.
 
  
 0.945
AMS40141.1
Hypothetical protein; Pfam:pfam15611 EH_Signature domain.
 
     0.939
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
  
 0.877
AMS42155.1
Putative exonuclease of the beta-lactamase fold involved in RNA processing; Pfam:pfam10996 Beta-Casp domain.
    
 0.795
AMS44242.1
Beta-lactamase.
    
 0.795
AMS40569.1
Hypothetical protein; Pfam:pfam00782 Dual specificity phosphatase, catalytic domain.
  
 0.735
AMS39956.1
Hypothetical protein; Pfam:pfam03567 Sulfotransferase family.
  
 0.688
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.666
AMS40399.1
TPR repeat-containing protein; Pfam:pfam13414 TPR repeat.
   
 0.654
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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