STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS40197.1Hypothetical protein. (454 aa)    
Predicted Functional Partners:
AMS44398.1
CtpF protein; Pfam:pfam13614 AAA domain.
 
  
 0.848
AMS44401.1
Flp pilus assembly protein CpaB.
 
  
 0.824
AMS44402.1
Pfam:pfam01478 Type IV leader peptidase family.
 
  
 0.784
AMS44406.1
Hypothetical protein.
 
   
 0.779
AMS44395.1
Pfam:pfam00482 Type II secretion system (T2SS), protein F.
 
    0.774
AMS44396.1
Pilus assembly protein; Pfam:pfam00482 Type II secretion system (T2SS), protein F.
 
  
 0.766
AMS44405.1
Pfam:pfam07811 TadE-like protein.
 
    0.762
AMS44404.1
Pfam:pfam13629 Pilus formation protein N terminal region.
 
  
 0.745
AMS44400.1
Hypothetical protein; Pfam:pfam00263 Bacterial type II and III secretion system protein; Belongs to the bacterial secretin family.
 
  
 0.744
AMS39324.1
Pilus assembly protein; Pfam:pfam13614 AAA domain.
 
  
 0.737
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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