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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS40206.1Hypothetical protein; Pfam:pfam04390 Lipopolysaccharide-assembly. (187 aa)    
Predicted Functional Partners:
leuS
Pfam:pfam13603 Leucyl-tRNA synthetase, Domain 2; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.804
AMS39749.1
Hypothetical protein; Pfam:pfam06144 DNA polymerase III, delta subunit.
 
    0.751
AMS39975.1
Pfam:pfam07219 HemY protein N-terminus.
  
     0.716
AMS40207.1
Putative ATPase; Pfam:pfam13304 AAA domain.
       0.716
AMS43020.1
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
 
     0.675
AMS39890.1
Membrane protein; Pfam:pfam02974 Protease inhibitor Inh.
  
     0.674
AMS42326.1
Hypothetical protein.
  
     0.673
AMS39181.1
Pfam:pfam06620 Protein of unknown function (DUF1150).
  
     0.655
AMS41245.1
Flagellar export protein FliJ.
  
     0.648
AMS40191.1
Pfam:pfam07940 Heparinase II/III-like protein.
  
     0.646
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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