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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS40219.1Carnitine dehydratase; Pfam:pfam02515 CoA-transferase family III; Belongs to the CoA-transferase III family. (363 aa)    
Predicted Functional Partners:
AMS42572.1
Pfam:pfam00441 Acyl-CoA dehydrogenase, C-terminal domain.
 
 
 0.581
AMS42559.1
Hypothetical protein; Pfam:pfam00441 Acyl-CoA dehydrogenase, C-terminal domain.
 
 
 0.578
AMS40220.1
dCMP deaminase; Pfam:pfam00383 Cytidine and deoxycytidylate deaminase zinc-binding region.
       0.558
AMS40221.1
Ankyrin; Pfam:pfam12796 Ankyrin repeats (3 copies).
  
    0.555
AMS42771.1
Pfam:pfam00441 Acyl-CoA dehydrogenase, C-terminal domain.
 
 
 0.551
AMS44232.1
Pfam:pfam00441 Acyl-CoA dehydrogenase, C-terminal domain.
 
 
 0.547
AMS42560.1
Pfam:pfam00441 Acyl-CoA dehydrogenase, C-terminal domain.
 
 
 0.526
AMS43677.1
Beta-lactamase; Pfam:pfam00753 Metallo-beta-lactamase superfamily.
 
    0.522
AMS42599.1
Pfam:pfam02771 Acyl-CoA dehydrogenase, N-terminal domain.
 
 
 0.516
AMS42329.1
Citrate lyase; Pfam:pfam03328 HpcH/HpaI aldolase/citrate lyase family; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.507
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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