Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMS40279.1Cytochrome C biogenesis protein CcmE; Pfam:pfam00106 short chain dehydrogenase. (260 aa)    
Predicted Functional Partners:
AMS44079.1
acetoacetyl-CoA synthetase; Pfam:pfam00501 AMP-binding enzyme.
    
 0.902
AMS40278.1
Alpha/beta hydrolase; Pfam:pfam01734 Patatin-like phospholipase.
 
   0.796
AMS39616.1
Hypothetical protein; Pfam:pfam00106 short chain dehydrogenase.
 
  
 0.657
AMS43496.1
Oxidoreductase, short chain dehydrogenase/reductase family; Pfam:pfam13561 Enoyl-(Acyl carrier protein) reductase.
 
  
 0.652
AMS40280.1
Hypothetical protein.
       0.505
AMS43288.1
Cysteine desulfurase; Pfam:pfam12796 Ankyrin repeats (3 copies).
  
 0.462
ispG
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family.
  
  
 0.441
AMS43322.1
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
 0.419
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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