Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
AMS40289.1Membrane protein. (137 aa)    
Predicted Functional Partners:
AMS44405.1
Pfam:pfam07811 TadE-like protein.
  
     0.687
AMS44406.1
Hypothetical protein.
  
     0.675
AMS40197.1
Hypothetical protein.
  
     0.646
AMS43569.1
Sel1 domain-containing protein repeat-containing protein.
  
     0.638
rpmF
Pfam:pfam01783 Ribosomal L32p protein family; Belongs to the bacterial ribosomal protein bL32 family.
 
     0.623
AMS42213.1
Pilus assembly protein PilZ; Pfam:pfam07238 PilZ domain.
  
     0.579
AMS44402.1
Pfam:pfam01478 Type IV leader peptidase family.
  
     0.577
AMS39875.1
Pfam:pfam13279 Thioesterase-like superfamily.
  
     0.523
AMS44404.1
Pfam:pfam13629 Pilus formation protein N terminal region.
  
     0.516
AMS42753.1
Branched-chain amino acid transport.
  
     0.490
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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