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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS40377.1Hypothetical protein. (120 aa)    
Predicted Functional Partners:
AMS40376.1
ATPase.
 
     0.907
AMS41373.1
Hypothetical protein.
  
     0.715
AMS41294.1
Hypothetical protein.
  
     0.629
AMS42061.1
Hypothetical protein; Pfam:pfam14399 NlpC/p60-like transpeptidase.
  
     0.579
AMS40375.1
ArsR family transcriptional regulator; Pfam:pfam12840 Helix-turn-helix domain.
       0.558
AMS42088.1
Pfam:pfam06674 Protein of unknown function (DUF1176).
  
     0.529
AMS41292.1
Hypothetical protein.
  
     0.517
AMS43554.1
Integrase; Pfam:pfam00589 Phage integrase family.
  
    0.508
AMS39723.1
Aminoglycoside adenylyltransferase; Pfam:pfam13523 Acetyltransferase (GNAT) domain.
 
    0.480
AMS43447.1
Hypothetical protein; Pfam:pfam00884 Sulfatase.
  
     0.477
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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