Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
AMS40421.1Pfam:pfam00106 short chain dehydrogenase. (265 aa)    
Predicted Functional Partners:
AMS40420.1
Lipid-transfer protein.
  
  
 0.754
AMS40417.1
Hypothetical protein; Pfam:pfam01968 Hydantoinase/oxoprolinase.
       0.741
AMS40418.1
Hypothetical protein; Pfam:pfam02538 Hydantoinase B/oxoprolinase.
       0.741
AMS40419.1
Hypothetical protein; Pfam:pfam12172 Rubredoxin-like zinc ribbon domain (DUF35_N).
       0.741
prfB
Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.
  
    0.541
AMS40422.1
Hypothetical protein; Pfam:pfam09084 NMT1/THI5 like.
       0.468
AMS44267.1
Long-chain fatty acid--CoA ligase; Pfam:pfam00501 AMP-binding enzyme.
 
 
 
 0.416
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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