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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS40437.1Putative cytoplasmic protein; Pfam:pfam06242 Protein of unknown function (DUF1013). (233 aa)    
Predicted Functional Partners:
rpmI
Pfam:pfam01632 Ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.
 
    0.800
AMS41771.1
Hypothetical protein; Pfam:pfam04386 Stringent starvation protein B.
  
   
 0.783
AMS40393.1
Pfam:pfam10073 Uncharacterized protein conserved in bacteria (DUF2312); Belongs to the UPF0335 family.
  
   
 0.780
lysS
lysine--tRNA ligase; Pfam:pfam01921 tRNA synthetases class I (K); Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.770
AMS39730.1
Calcium-binding protein; Pfam:pfam04280 Tim44-like domain.
  
     0.754
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
     0.742
AMS39696.1
Hypothetical protein; Pfam:pfam13361 UvrD-like helicase C-terminal domain; Belongs to the helicase family. UvrD subfamily.
  
     0.712
AMS39697.1
LuxR family transcriptional regulator; Pfam:pfam12705 PD-(D/E)XK nuclease superfamily.
  
     0.712
AMS39960.1
Membrane protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
  
     0.696
atpF-2
Hypothetical protein; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.
  
   
 0.656
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.