Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AMS40547.1Hypothetical protein; Pfam:pfam05239 PRC-barrel domain. (315 aa)    
Predicted Functional Partners:
AMS40538.1
Chemotaxis protein CheY; Pfam:pfam00072 Response regulator receiver domain.
 
    0.681
AMS40536.1
Pfam:pfam07536 HWE histidine kinase.
 
     0.642
AMS40545.1
Hypothetical protein; Pfam:pfam07536 HWE histidine kinase.
 
    0.616
AMS40533.1
Hypothetical protein; Pfam:pfam03924 CHASE domain.
 
    0.611
AMS40539.1
RNA polymerase sigma factor; Pfam:pfam08281 Sigma-70, region 4; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.484
AMS40546.1
Hypothetical protein.
       0.438
AMS40542.1
Hypothetical protein; Pfam:pfam01594 Domain of unknown function DUF20.
 
     0.436
AMS39625.1
Hypothetical protein; Pfam:pfam05532 CsbD-like; Belongs to the UPF0337 (CsbD) family.
 
     0.433
AMS41751.1
Pfam:pfam05981 CreA protein.
 
     0.403
AMS40537.1
Hypothetical protein.
  
     0.401
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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