STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS40629.1ATP-binding protein; Pfam:pfam02492 CobW/HypB/UreG, nucleotide-binding domain. (377 aa)    
Predicted Functional Partners:
AMS40628.1
Pfam:pfam00768 D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
     
 0.805
rpsN
30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
 
 0.581
dksA
Molecular chaperone DnaK; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters.
  
  
 0.506
rpmG
Pfam:pfam00471 Ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
 
  
 0.502
rpmB
Pfam:pfam00830 Ribosomal L28 family; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.482
AMS41842.1
Precorrin-6Y C(5,15)-methyltransferase (Decarboxylating); Pfam:pfam00590 Tetrapyrrole (Corrin/Porphyrin) Methylases.
     
 0.477
AMS40627.1
Amidohydrolase; Pfam:pfam01546 Peptidase family M20/M25/M40.
       0.472
AMS39245.1
Iron ABC transporter substrate-binding protein; Pfam:pfam01297 Periplasmic solute binding protein family; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.457
AMS43083.1
Metal ABC transporter substrate-binding protein; Pfam:pfam01297 Periplasmic solute binding protein family; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.457
AMS40843.1
Hypothetical protein.
 
   
 0.432
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.