Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AMS40680.1Hypothetical protein; Pfam:pfam13779 Domain of unknown function (DUF4175). (861 aa)    
Predicted Functional Partners:
AMS41312.1
RNA-binding protein; Pfam:pfam13709 Domain of unknown function (DUF4159).
  
    0.780
AMS41313.1
Pfam:pfam01882 Protein of unknown function DUF58.
  
   
 0.779
AMS41311.1
Pfam:pfam07090 Protein of unknown function (DUF1355).
  
     0.774
AMS42744.1
ATP-binding protein; Pfam:pfam08904 Domain of unknown function (DUF1849).
  
     0.754
AMS40399.1
TPR repeat-containing protein; Pfam:pfam13414 TPR repeat.
 
   
 0.714
AMS43789.1
Hypothetical protein; Pfam:pfam09413 Domain of unknown function (DUF2007).
 
     0.688
AMS39975.1
Pfam:pfam07219 HemY protein N-terminus.
  
  
 0.651
AMS42870.1
Pfam:pfam13116 Protein of unknown function.
  
     0.632
AMS38979.1
Cro/Cl family transcriptional regulator; Pfam:pfam01381 Helix-turn-helix.
  
     0.601
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
       0.569
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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