STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS40696.1Ribonuclease BN; Pfam:pfam03631 Virulence factor BrkB. (283 aa)    
Predicted Functional Partners:
AMS40695.1
Pfam:pfam00106 short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
    0.606
AMS40694.1
Membrane protein.
       0.559
AMS40693.1
cob(I)yrinic acid a,c-diamide adenosyltransferase; Pfam:pfam01923 Cobalamin adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family.
       0.551
AMS43020.1
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
   
 0.548
AMS42619.1
Pfam:pfam06776 Invasion associated locus B (IalB) protein.
  
     0.542
AMS43552.1
Hypothetical protein; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
   
 0.536
AMS39181.1
Pfam:pfam06620 Protein of unknown function (DUF1150).
  
     0.535
AMS43553.1
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
   
 0.534
AMS40396.1
Pfam:pfam06282 Protein of unknown function (DUF1036).
  
     0.501
AMS40692.1
Hypothetical protein; Pfam:pfam01694 Rhomboid family.
  
  
 0.479
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.