Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
AMS40783.1Hypothetical protein. (100 aa)    
Predicted Functional Partners:
AMS40784.1
Acetyltransferase.
       0.601
AMS40782.1
Pfam:pfam07920 Protein of unknown function (DUF1684).
       0.528
AMS40781.1
palmitoyl-CoA hydrolase; Pfam:pfam08840 BAAT / Acyl-CoA thioester hydrolase C terminal.
       0.484
AMS41516.1
Pfam:pfam11924 Protein of unknown function (DUF3442).
  
     0.430
AMS40779.1
GntR family transcriptional regulator; Pfam:pfam07729 FCD domain.
       0.415
AMS40780.1
Pfam:pfam02615 Malate/L-lactate dehydrogenase; Belongs to the LDH2/MDH2 oxidoreductase family.
       0.415
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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