Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AMS40801.1Hypothetical protein. (440 aa)    
Predicted Functional Partners:
AMS40800.1
Lysine transporter LysE; Pfam:pfam01810 LysE type translocator.
       0.757
AMS40797.1
Lactamase; Pfam:pfam00753 Metallo-beta-lactamase superfamily.
 
    0.590
AMS41047.1
Pfam:pfam07787 Protein of unknown function (DUF1625).
  
     0.509
AMS40799.1
Lipoprotein; Pfam:pfam03734 L,D-transpeptidase catalytic domain.
  
    0.503
AMS40234.1
Hypothetical protein; Pfam:pfam03372 Endonuclease/Exonuclease/phosphatase family.
   
    0.463
AMS44137.1
Hypothetical protein; Pfam:pfam03372 Endonuclease/Exonuclease/phosphatase family.
   
    0.463
xylB
Xylulokinase; Pfam:pfam00370 FGGY family of carbohydrate kinases, N-terminal domain.
       0.446
AMS39685.1
2-hydroxymuconic semialdehyde hydrolase; Pfam:pfam12697 Alpha/beta hydrolase family.
  
     0.415
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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