Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMS40836.1Hypothetical protein; Pfam:pfam13566 Domain of unknown function (DUF4130. (483 aa)    
Predicted Functional Partners:
AMS40837.1
Biotin synthase; Pfam:pfam04055 Radical SAM superfamily.
 
    0.955
AMS43580.1
Phage SPO1 DNA polymerase-like protein; Pfam:pfam03167 Uracil DNA glycosylase superfamily.
  
  
0.922
AMS43545.1
SPO1 DNA polymerase; Pfam:pfam03167 Uracil DNA glycosylase superfamily.
     
 0.916
AMS40540.1
Histidine kinase.
  
     0.623
AMS39298.1
General stress protein.
 
     0.558
AMS40001.1
Pfam:pfam01028 Eukaryotic DNA topoisomerase I, catalytic core.
  
     0.529
AMS40838.1
Pfam:pfam00120 Glutamine synthetase, catalytic domain.
       0.515
AMS38988.1
Peptidase M22; Pfam:pfam00814 Glycoprotease family.
  
    0.492
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.491
AMS44243.1
Pfam:pfam01068 ATP dependent DNA ligase domain.
 
     0.477
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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