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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS40836.1Hypothetical protein; Pfam:pfam13566 Domain of unknown function (DUF4130. (483 aa)    
Predicted Functional Partners:
AMS40837.1
Biotin synthase; Pfam:pfam04055 Radical SAM superfamily.
 
  
 0.954
AMS43580.1
Phage SPO1 DNA polymerase-like protein; Pfam:pfam03167 Uracil DNA glycosylase superfamily.
  
  
0.922
AMS43545.1
SPO1 DNA polymerase; Pfam:pfam03167 Uracil DNA glycosylase superfamily.
     
 0.910
AMS40540.1
Histidine kinase.
 
     0.624
AMS39298.1
General stress protein.
 
     0.561
AMS40001.1
Pfam:pfam01028 Eukaryotic DNA topoisomerase I, catalytic core.
 
     0.529
AMS40838.1
Pfam:pfam00120 Glutamine synthetase, catalytic domain.
       0.523
AMS44243.1
Pfam:pfam01068 ATP dependent DNA ligase domain.
 
   
 0.498
AMS44242.1
Beta-lactamase.
 
     0.474
AMS40839.1
Pfam:pfam00202 Aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.468
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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