STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS40893.1RpiR family transcriptional regulator; Pfam:pfam01380 SIS domain. (281 aa)    
Predicted Functional Partners:
AMS40895.1
C4-dicarboxylate ABC transporter permease; Pfam:pfam04290 Tripartite ATP-independent periplasmic transporters, DctQ component.
 
     0.761
AMS40897.1
C4-dicarboxylate ABC transporter; Pfam:pfam03480 Bacterial extracellular solute-binding protein, family 7.
 
     0.751
AMS40894.1
Pfam:pfam05013 N-formylglutamate amidohydrolase.
 
  
 0.749
AMS40898.1
Pfam:pfam00120 Glutamine synthetase, catalytic domain.
 
    0.696
AMS40896.1
C4-dicarboxylate ABC transporter; Pfam:pfam06808 DctM-like transporters.
 
     0.694
AMS40901.1
Pfam:pfam00465 Iron-containing alcohol dehydrogenase.
 
   
 0.694
AMS40594.1
Hypothetical protein; Pfam:pfam01418 Helix-turn-helix domain, rpiR family.
 
     0.674
AMS40899.1
Pfam:pfam00171 Aldehyde dehydrogenase family; Belongs to the aldehyde dehydrogenase family.
 
    0.623
AMS40892.1
Transporter, putative; Pfam:pfam13437 HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.431
AMS40891.1
Multidrug transporter AcrB; Pfam:pfam00873 AcrB/AcrD/AcrF family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
       0.419
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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