STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS40900.1Pfam:pfam10754 Protein of unknown function (DUF2569). (159 aa)    
Predicted Functional Partners:
AMS40899.1
Pfam:pfam00171 Aldehyde dehydrogenase family; Belongs to the aldehyde dehydrogenase family.
       0.762
AMS40901.1
Pfam:pfam00465 Iron-containing alcohol dehydrogenase.
     
 0.664
AMS40898.1
Pfam:pfam00120 Glutamine synthetase, catalytic domain.
     
 0.574
AMS44355.1
Diguanylate cyclase; Pfam:pfam00990 GGDEF domain.
  
  
 0.502
AMS41804.1
Hypothetical protein.
  
 
 0.473
AMS42542.1
Pfam:pfam00481 Protein phosphatase 2C.
  
 
 0.473
AMS42307.1
Nitrate ABC transporter substrate-binding protein; Pfam:pfam09084 NMT1/THI5 like.
 
  
 0.438
AMS40358.1
Hypothetical protein; Pfam:pfam12969 Domain of Unknown Function with PDB structure (DUF3857).
 
   
 0.434
AMS40522.1
PAS/PAC sensor hybrid histidine kinase; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
   
 
 0.428
AMS40897.1
C4-dicarboxylate ABC transporter; Pfam:pfam03480 Bacterial extracellular solute-binding protein, family 7.
       0.409
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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