Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMS40966.1Homospermidine synthase; Pfam:pfam03435 Saccharopine dehydrogenase. (481 aa)    
Predicted Functional Partners:
AMS40993.1
Ornithine decarboxylase; Pfam:pfam02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
 
     0.648
AMS40968.1
Hypothetical protein; Pfam:pfam05016 Plasmid stabilisation system protein.
 
     0.554
AMS40967.1
Pfam:pfam11927 Protein of unknown function (DUF3445).
       0.523
AMS40971.1
Aminodeoxychorismate synthase; Pfam:pfam00425 chorismate binding enzyme.
       0.498
AMS41892.1
Protein tyrosine/serine phosphatase.
  
     0.498
AMS40969.1
CopG family transcriptional regulator.
       0.486
AMS40972.1
Pfam:pfam01432 Peptidase family M3.
       0.481
AMS39459.1
CysZ; Pfam:pfam07264 Etoposide-induced protein 2.
  
     0.467
AMS40970.1
Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; Pfam:pfam01063 Aminotransferase class IV.
       0.462
AMS39768.1
Pfam:pfam04241 Protein of unknown function (DUF423).
  
     0.426
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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