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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS40968.1Hypothetical protein; Pfam:pfam05016 Plasmid stabilisation system protein. (99 aa)    
Predicted Functional Partners:
AMS40969.1
CopG family transcriptional regulator.
  
 
 0.984
AMS44018.1
CopG family transcriptional regulator.
  
 
 0.864
AMS40967.1
Pfam:pfam11927 Protein of unknown function (DUF3445).
       0.773
AMS40970.1
Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; Pfam:pfam01063 Aminotransferase class IV.
       0.605
AMS40971.1
Aminodeoxychorismate synthase; Pfam:pfam00425 chorismate binding enzyme.
       0.601
AMS40966.1
Homospermidine synthase; Pfam:pfam03435 Saccharopine dehydrogenase.
 
     0.554
AMS40972.1
Pfam:pfam01432 Peptidase family M3.
       0.553
AMS41920.1
Pfam:pfam02371 Transposase IS116/IS110/IS902 family.
 
    0.440
AMS43286.1
Pfam:pfam02371 Transposase IS116/IS110/IS902 family.
 
    0.407
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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