Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AMS40990.1Pfam:pfam06226 Protein of unknown function (DUF1007). (221 aa)    
Predicted Functional Partners:
AMS40989.1
Nickel ABC transporter permease; Pfam:pfam03824 High-affinity nickel-transport protein; Belongs to the NiCoT transporter (TC 2.A.52) family.
   
 0.973
AMS40992.1
Amidase; Pfam:pfam01425 Amidase; Belongs to the amidase family.
       0.584
AMS41322.1
Hypothetical protein.
  
     0.578
AMS40991.1
LysR family transcriptional regulator; Pfam:pfam03466 LysR substrate binding domain; Belongs to the LysR transcriptional regulatory family.
       0.575
AMS40396.1
Pfam:pfam06282 Protein of unknown function (DUF1036).
  
     0.569
AMS43779.1
Hypothetical protein.
  
     0.565
AMS42261.1
Pfam:pfam05036 Sporulation related domain.
 
     0.555
AMS42619.1
Pfam:pfam06776 Invasion associated locus B (IalB) protein.
  
     0.546
AMS40673.1
Cell division protein FtsX.
  
     0.531
AMS42069.1
Pfam:pfam09832 Uncharacterized protein conserved in bacteria (DUF2059).
  
     0.524
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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