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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS41047.1Pfam:pfam07787 Protein of unknown function (DUF1625). (395 aa)    
Predicted Functional Partners:
AMS40801.1
Hypothetical protein.
  
     0.509
AMS40781.1
palmitoyl-CoA hydrolase; Pfam:pfam08840 BAAT / Acyl-CoA thioester hydrolase C terminal.
  
     0.488
AMS43583.1
Hypothetical protein.
  
     0.487
AMS41897.1
Dimethylglycine dehydrogenase; Pfam:pfam01266 FAD dependent oxidoreductase; Belongs to the GcvT family.
 
     0.444
AMS39685.1
2-hydroxymuconic semialdehyde hydrolase; Pfam:pfam12697 Alpha/beta hydrolase family.
 
     0.429
AMS41386.1
Pfam:pfam06325 Ribosomal protein L11 methyltransferase (PrmA).
 
     0.412
AMS40797.1
Lactamase; Pfam:pfam00753 Metallo-beta-lactamase superfamily.
 
   
 0.408
AMS41964.1
Glycine cleavage system protein T; Pfam:pfam01266 FAD dependent oxidoreductase; Belongs to the GcvT family.
 
     0.406
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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