STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ndoAMocE; Pfam:pfam00355 Rieske [2Fe-2S] domain. (104 aa)    
Predicted Functional Partners:
AMS41067.1
Pfam:pfam00487 Fatty acid desaturase.
  
 0.989
AMS41065.1
Ferredoxin reductase; Pfam:pfam07992 Pyridine nucleotide-disulphide oxidoreductase.
 
 
 0.909
AMS43709.1
Nitrite reductase (NAD(P)H), large subunit; Pfam:pfam07992 Pyridine nucleotide-disulphide oxidoreductase; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
 
  
 0.840
AMS39211.1
Siroheme synthase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD-dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme.
  
  
 0.799
AMS41068.1
LacI family transcriptional regulator; Pfam:pfam13407 Periplasmic binding protein domain.
 
     0.734
AMS40132.1
Pyridine nucleotide-disulfide oxidoreductase domain protein; Pfam:pfam07992 Pyridine nucleotide-disulphide oxidoreductase.
 
  
 0.692
AMS40105.1
Hypothetical protein; Pfam:pfam07992 Pyridine nucleotide-disulphide oxidoreductase.
 
  
 0.690
AMS44286.1
Hypothetical protein; Pfam:pfam07992 Pyridine nucleotide-disulphide oxidoreductase.
 
  
 0.689
AMS43707.1
Nitrate reductase; Pfam:pfam00384 Molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
 
  
 0.587
AMS43712.1
Chemotaxis protein CheY; Pfam:pfam03861 ANTAR domain.
 
  
 0.565
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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