STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS41068.1LacI family transcriptional regulator; Pfam:pfam13407 Periplasmic binding protein domain. (343 aa)    
Predicted Functional Partners:
AMS41067.1
Pfam:pfam00487 Fatty acid desaturase.
 
    0.878
AMS41069.1
Pfam:pfam01261 Xylose isomerase-like TIM barrel.
 
     0.853
AMS40760.1
Hypothetical protein; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
   
 
 0.794
AMS39199.1
Hypothetical protein; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
   
 
 0.778
AMS40285.1
Chemotaxis protein CheY; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
   
 
 0.759
ndoA
MocE; Pfam:pfam00355 Rieske [2Fe-2S] domain.
 
     0.734
AMS41074.1
5-dehydro-2-deoxygluconokinase; Pfam:pfam09863 Uncharacterized protein conserved in bacteria (DUF2090).
 
  
 0.694
AMS41070.1
Pfam:pfam13407 Periplasmic binding protein domain.
 
     0.664
AMS41076.1
Pfam:pfam01261 Xylose isomerase-like TIM barrel.
 
    0.635
AMS43655.1
Sugar ABC transporter ATP-binding protein; Pfam:pfam00005 ABC transporter.
 
 
 0.601
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.