STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS41095.1Pfam:pfam01266 FAD dependent oxidoreductase. (384 aa)    
Predicted Functional Partners:
AMS40228.1
Putative D-amino acid aminotransferase; Pfam:pfam01063 Aminotransferase class IV.
    
 0.901
AMS42692.1
D-amino acid aminotransferase; Pfam:pfam01063 Aminotransferase class IV.
    
 0.901
AMS40885.1
Sarcosine oxidase subunit alpha; Pfam:pfam01571 Aminomethyltransferase folate-binding domain.
  
 
 0.740
AMS41906.1
(2Fe-2S)-binding protein; Pfam:pfam01571 Aminomethyltransferase folate-binding domain.
  
 
 0.740
AMS41096.1
Transcriptional regulator; Pfam:pfam12844 Helix-turn-helix domain.
  
  
 0.578
AMS41094.1
Peptide ABC transporter substrate-binding protein; Pfam:pfam00496 Bacterial extracellular solute-binding proteins, family 5 Middle.
       0.558
AMS41905.1
Pfam:pfam04268 Sarcosine oxidase, gamma subunit family.
 
 
 0.509
AMS41093.1
Beta-lactamase; Pfam:pfam00144 Beta-lactamase.
       0.502
AMS39528.1
Hypothetical protein; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
  
  
 0.424
AMS42028.1
Pfam:pfam01070 FMN-dependent dehydrogenase.
  
 
 0.404
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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