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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS41123.1Pfam:pfam02317 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain. (359 aa)    
Predicted Functional Partners:
der
GTP-binding protein Der; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
  
  
 0.813
AMS41119.1
FAD-dependent oxidoreductase; Pfam:pfam13454 FAD-NAD(P)-binding.
 
  
 0.769
AMS41120.1
Hypothetical protein.
 
     0.760
AMS41121.1
Alkylhydroperoxidase; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
 
     0.742
AMS41115.1
Spermidine/putrescine-binding periplasmic protein; Pfam:pfam13416 Bacterial extracellular solute-binding protein.
 
    0.673
AMS39956.1
Hypothetical protein; Pfam:pfam03567 Sulfotransferase family.
 
 
 0.645
AMS41122.1
Transcriptional regulator, XRE family; Pfam:pfam01381 Helix-turn-helix.
 
     0.633
lgt
Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.
  
  
 0.606
ydcV_6
Putative spermidine/putrescine ABC transporter, permease protein.
 
  
 0.477
AMS41911.1
Pfam:pfam01040 UbiA prenyltransferase family; Belongs to the UbiA prenyltransferase family.
     
 0.471
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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