STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS41227.1Viral (Superfamily 1) RNA helicase; Pfam:pfam13604 AAA domain. (375 aa)    
Predicted Functional Partners:
AMS39696.1
Hypothetical protein; Pfam:pfam13361 UvrD-like helicase C-terminal domain; Belongs to the helicase family. UvrD subfamily.
  
 
 0.872
AMS41229.1
Chromosomal replication initiator DnaA domain protein; Pfam:pfam08299 Bacterial dnaA protein helix-turn-helix.
  
  
 0.805
AMS41214.1
Exonuclease RNase T and DNA polymerase III; Pfam:pfam00929 Exonuclease.
     
 0.786
AMS41221.1
Pfam:pfam00929 Exonuclease.
     
 0.786
AMS41217.1
Hypothetical protein; Pfam:pfam08719 Domain of unknown function (DUF1768).
     
 0.783
AMS41231.1
Hypothetical protein; Pfam:pfam08719 Domain of unknown function (DUF1768).
     
 0.783
AMS41210.1
Pfam:pfam03837 RecT family.
     
 0.781
AMS41211.1
Hypothetical protein.
       0.773
AMS41212.1
Hypothetical protein.
       0.773
AMS41213.1
Hypothetical protein.
       0.773
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.